Jillion Case Studies are more in depth examples / scenarios than what is covered by the. These Case Studies are real world situations where Jillion was used to solve BioInformatics problems that would be difficult or impossible to do otherwise.
- Correcting mis-assemblies caused by Celera Assembler 7 beta - Using Jillion ContigBuilders to re-align poritions of contigs including underlying gapped read sequence and recalling consensus that were mis-assembled due to a bug in a beta version of Celera Assembler.
- Filter Variant calls caused by sequencing specific errors - Next-gen sequencing technologies have known sequence-specific error profiles Nakamura et all 2011 that can cause false single-nucleotide polymorphism (SNP) calls in assemblies. Jillion was used to find statistically unlikely SNPs and filtered them out of variant reports.